PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100184370201
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 423aa    MW: 45958.5 Da    PI: 7.7839
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100184370201genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.57.9e-124671126
                                  --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                                  ++++ C +++rtG C yG++C+F+H+
  Ote100184370201|100184370201 46 PGEPDCIYYLRTGSCGYGNNCRFNHP 71
                                  5789*********************8 PP
2zf-CCCH35.51.6e-1193117327
                                   S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                   ++ C ++++tGtCk+G++Ck++H++
  Ote100184370201|100184370201  93 QPDCGYYLKTGTCKFGSTCKYHHPK 117
                                   789********************96 PP
3zf-CCCH33.66.6e-11137160427
                                   ---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                                   ++C+f++rtG C+yG  CkF H++
  Ote100184370201|100184370201 137 KPCPFYMRTGLCRYGHACKFDHPQ 160
                                   58********************97 PP
4zf-CCCH36.39.4e-12264289227
                                   -S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                   ++++Cr+f++ G CkyG+ Ck++H++
  Ote100184370201|100184370201 264 DQPECRYFMEHGSCKYGPECKYHHPR 289
                                   689*********************96 PP
5zf-CCCH33.76e-11309334126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   ++++ C++++ +G CkyG++C+F H+
  Ote100184370201|100184370201 309 PGQPVCSYYSLYGLCKYGPTCRFDHP 334
                                   5789*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.1644573IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-54572IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-94771IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-65073IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-55170IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-590117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6890118IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-993117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-595119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-7132162IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4133160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.075133161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5137159IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-9137160IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5262289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.324262290IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9264289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-6265292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5268290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6307334IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-7308335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.568308336IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-8310334IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4313334IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MPGNRRFARN GSTSDRVEEA MRRLKVEDSD DNGRMGDELG TYPDRPGEPD CIYYLRTGSC  60
GYGNNCRFNH PSTNAGQVYG VKTSSEHPER AGQPDCGYYL KTGTCKFGST CKYHHPKDRQ  120
TDTMLNMLGL PMRQEAKPCP FYMRTGLCRY GHACKFDHPQ PALAANVLPV VGPVYGSGGS  180
AVVPSSGVSS ASELSAASLS KATYFANPLX XXXHALVSTS ITGMEYIYVL VKTGGVSPLP  240
VTSVLTAPVS NGQLSVSYLP ERPDQPECRY FMEHGSCKYG PECKYHHPRE KVSQLVSTSL  300
GPLGLPLRPG QPVCSYYSLY GLCKYGPTCR FDHPIDGYSY AYSLSMPPLA SAYSPPAPYQ  360
TTASLVPVVD ASPARLSDWI KKGATASNKH QDSNTEELGD SPRRSDSPPH SSKASSEVNH  420
ESD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085489.10.0zinc finger CCCH domain-containing protein 33 isoform X2
TrEMBLA0A4D8XVR10.0A0A4D8XVR1_SALSN; Uncharacterized protein
STRINGMigut.H01247.1.p1e-167(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135711016