PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100184950081

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HD-ZIP

Protein Properties

Length: 212aa MW: 24190.1 Da PI: 9.2913

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100184950081	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61	1.8e-19	74	128	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq ++Lee F +n++++ +e+e LA++l+L+ rqV vWFqNrRa+ k Ote100184950081\|100184950081 74 RKKLRLTKEQSQRLEENFLQNPTLNPKEKEALAMELRLKARQVEVWFQNRRARSK 128 78889************************************************98 PP
2	HD-ZIP_I/II	105.6	3.8e-34	74	162	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 +kk+rl+keq++ LEe+F ++ +L+p++K++la eL+l++rqv+vWFqnrRAR k+kq+E ++e+Lkr++ al+e+n+rL+ Ote100184950081\|100184950081 74 RKKLRLTKEQSQRLEENFLQNPTLNPKEKEALAMELRLKARQVEVWFQNRRARSKMKQTEIECEYLKRRFVALTEQNRRLQ 154 69**************9999******************************************************* PP HD-ZIP_I/II 82 keveeLree 90 keveeLr + Ote100184950081\|100184950081 155 KEVEELR-S 162 ****9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.9E-19	48	131	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.18E-19	64	131	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.621	70	130	IPR001356	Homeobox domain
SMART	SM00389	9.9E-16	72	134	IPR001356	Homeobox domain
CDD	cd00086	7.66E-16	73	128	No hit	No description
Pfam	PF00046	5.0E-17	74	128	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	105	128	IPR017970	Homeobox, conserved site
SMART	SM00340	8.4E-14	130	173	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	5.2E-8	130	162	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MEILPRNTTC LDLSIAMPGF SPPSLSSSGA AKGGAAIKLL DINEAPSRSQ EECMVEDDDE 60 EENPNRYGYG AGPRKKLRLT KEQSQRLEEN FLQNPTLNPK EKEALAMELR LKARQVEVWF 120 QNRRARSKMK QTEIECEYLK RRFVALTEQN RRLQKEVEEL RSVKAVXXXX XXXXXXXXXX 180 TMCPHCERAA ATSSEGKVGF LQRRRPSAVS NK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021677750.1	4e-67	homeobox-leucine zipper protein HOX3-like
Swissprot	Q8S9N6	2e-57	ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBL	A0A2C9UFF9	7e-65	A0A2C9UFF9_MANES; Uncharacterized protein
STRING	cassava4.1_022041m	1e-65	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Publications ? help Back to Top
Zhao P, et al. ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress. Sci Rep, 2017. 7: p. 45492 [PMID:28358040]