PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100185220031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 195aa    MW: 20542.1 Da    PI: 7.1776
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100185220031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY635e-202471559
                                  -TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY 15 vkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                                   kg+++pr+YYrCt+  gCpv+k+v+r+ae+ +v+++tYeg+Hnh+
  Ote100185220031|100185220031  2 AKGNPCPRAYYRCTMGvGCPVRKQVQRCAEERSVLVTTYEGQHNHP 47
                                  59*************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.459149IPR003657WRKY domain
SMARTSM007744.4E-17148IPR003657WRKY domain
PfamPF031062.0E-16247IPR003657WRKY domain
SuperFamilySSF1182904.97E-17249IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-19249IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MAKGNPCPRA YYRCTMGVGC PVRKQVQRCA EERSVLVTTY EGQHNHPLPP AAMAMASTTS  60
AAATMLLSGS MPSADGLHVS KSDHMYSQNM PTLSASAPFP TVTLDLTNDN AHNPNMIPPQ  120
AQAQPHLFFQ GTPAPDHSRV PSSNTSQEIV NALAADPNFS AAVAAAISLI LGGAQSSNAV  180
EDRNTSPKNM RDVGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-132512876WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028110002.12e-62WRKY transcription factor 6-like
SwissprotQ9XEC34e-48WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A151SBM82e-59A0A151SBM8_CAJCA; WRKY transcription factor 6 (Fragment)
STRINGEOX954658e-57(Theobroma cacao)
STRINGXP_004487422.12e-57(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9452492