PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100185550031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

C2H2

Protein Properties

Length: 343aa MW: 37886.1 Da PI: 8.8995

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100185550031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00028	75	97	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + Ote100185550031\|100185550031 75 WKCEKCSKRYAVQSDWKAHSKIC 97 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.4E-5	63	96	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MGVDDSLSNL TSAISNEASI NSSSNVNAME GTIPHQQPYN SSLQPPPKKR RNLPGNPDLT 60 GIKKHFSRKH GEKKWKCEKC SKRYAVQSDW KAHSKICGTR EYRCDCGTLF SRRDSFITHR 120 AFCDALAEET SRSAPQTAPN HPLLHHHPFL PLKQETLNFT LPPWLSSDHH IFSPIQETPS 180 NPALFQPPSA AAPSLTSATA LLHKAAQXXX XXXXXXXXXX XXXXXXXXXX XXXXRESSQL 240 VSGGKLANLT GGCMEGGIGG ENIFQENVGM MASTSGFDGF DDSFNGIFSA KRSGIPSFQH 300 DGNFMGLRRX XXXXXXXXGG GDGMTRXXXX XXXXXXRVER IPT

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MGVDDSLSNL TSAISNEASI NSSSNVNAME GTIPHQQPYN SSLQPPPKKR RNLPGNPDLT  60
GIKKHFSRKH GEKKWKCEKC SKRYAVQSDW KAHSKICGTR EYRCDCGTLF SRRDSFITHR  120
AFCDALAEET SRSAPQTAPN HPLLHHHPFL PLKQETLNFT LPPWLSSDHH IFSPIQETPS  180
NPALFQPPSA AAPSLTSATA LLHKAAQXXX XXXXXXXXXX XXXXXXXXXX XXXXRESSQL  240
VSGGKLANLT GGCMEGGIGG ENIFQENVGM MASTSGFDGF DDSFNGIFSA KRSGIPSFQH  300
DGNFMGLRRX XXXXXXXXGG GDGMTRXXXX XXXXXXRVER IPT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-35	71	132	3	64	Zinc finger protein JACKDAW
5b3h_F	3e-35	71	132	3	64	Zinc finger protein JACKDAW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011081677.1	2e-61	protein indeterminate-domain 7 isoform X1
Refseq	XP_011081679.1	2e-61	protein indeterminate-domain 7 isoform X2
TrEMBL	A0A4D9AQA0	1e-80	A0A4D9AQA0_SALSN; Uncharacterized protein