PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100185550061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 331aa    MW: 37453.8 Da    PI: 4.6853
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100185550061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.41.7e-36351262102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k++e++ed++++++isws  +nsf+v+d+++f++++Lp+yFkh nf+SFvRQLn+YgF+kv+ ++         weF+
  Ote100185550061|100185550061  35 FLTKTFEMVEDSSTDSVISWSGAKNSFIVWDSHKFSTDLLPRYFKHGNFSSFVRQLNTYGFRKVDPDR---------WEFA 106
                                   9********************999*****************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   ++ F kg+k+ll++ikr+++
  Ote100185550061|100185550061 107 NEGFLKGQKHLLKNIKRRRN 126
                                   *****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.1E-5931124IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.04E-3532124IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.5E-3832124IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.4E-3235124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-183558IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-187385IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407498IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-188698IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEGVSVKIEE ENDAVCGSAA PQPIESLHDL GTPPFLTKTF EMVEDSSTDS VISWSGAKNS  60
FIVWDSHKFS TDLLPRYFKH GNFSSFVRQL NTYGFRKVDP DRWEFANEGF LKGQKHLLKN  120
IKRRRNVVQS TSQHGGPCVE IGHYGKEEEL ERLKRDRDVL MAEIVKLKQQ QHSSRERLMV  180
IEQRIHSSER KQMQMTSFVA KAFSNPAFFQ QYKDVYGRKD NQNSVELGQK RRLTMSPSIE  240
NLQNVGDQCL DVETEMESLF SAALDDESSS GVKEAVLSSD ENLLDTLLGG DEAVENLVSD  300
RTENVPVEDL AAETSNWGED LQEIADQLGL L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-263212417120Heat shock factor protein 1
5d5u_B3e-263212426129Heat shock factor protein 1
5d5v_B3e-263212426129Heat shock factor protein 1
5d5v_D3e-263212426129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019250187.11e-141PREDICTED: heat shock factor protein HSF30
RefseqXP_028053226.11e-141heat shock factor protein HSF30
SwissprotP411521e-132HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A455R7K41e-140A0A455R7K4_TOBAC; Heat shock factor A2
STRINGXP_009612082.11e-140(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]