PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100185610101
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NF-YB
Protein Properties Length: 260aa    MW: 29620.3 Da    PI: 4.7682
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100185610101genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB61.51.9e-191184376
                         NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGf 76
                                  ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +++se+++ c+re+++ti+++ +l al +l +
  Ote100185610101|100185610101 11 KEDASLPKATMTKIIKEMLPPEVRVARDAQDLLIECCVEFINLISSESNEVCNREEKRTIAPEHVLKALENLQM 84
                                  6899*****************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.3E-271084IPR009072Histone-fold
SuperFamilySSF471138.71E-251284IPR009072Histone-fold
PfamPF008082.7E-211479IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEPMDIVGRT KEDASLPKAT MTKIIKEMLP PEVRVARDAQ DLLIECCVEF INLISSESNE  60
VCNREEKRTI APEHVLKALE NLQMHLVDEV FILSFDLEES ILRTQFLAKI IDICQVSWHC  120
ELAVVLGFRE YIAEVYAAYE QHRLETIXXX XXXXXXXXXX XXXXXXXXTC TRTHTHARDP  180
HLQTQHVDNT SSRFYYMYVS GGTPNLDTVR SGKWSNGAEM TEEEALAEQQ RMFAEARARM  240
NGGASAPKQS DSETQPSANS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B7e-2312821281Transcription Regulator NC2 beta chain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027121514.12e-75protein Dr1 homolog
SwissprotP495923e-53NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A068TQ895e-74A0A068TQ89_COFCA; Uncharacterized protein
STRINGXP_008244062.11e-72(Prunus mume)
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]