PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100185610102
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NF-YB
Protein Properties Length: 178aa    MW: 19994.8 Da    PI: 4.3971
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100185610102genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB62.68.2e-201184376
                         NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGf 76
                                  ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +++se+++ c+re+++ti+++ +l al +l +
  Ote100185610102|100185610102 11 KEDASLPKATMTKIIKEMLPPEVRVARDAQDLLIECCVEFINLISSESNEVCNREEKRTIAPEHVLKALENLQM 84
                                  6899*****************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.9E-2810160IPR009072Histone-fold
SuperFamilySSF471134.66E-2712161IPR009072Histone-fold
PfamPF008081.3E-211479IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MEPMDIVGRT KEDASLPKAT MTKIIKEMLP PEVRVARDAQ DLLIECCVEF INLISSESNE  60
VCNREEKRTI APEHVLKALE NLQMHLVDEV FILSFDLEES ILRTQFLAKI IDICQVSWHC  120
ELAVDTVRSG KWSNGAEMTE EEALAEQQRM FAEARARMNG GASAPKQSDS ETQPSANS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B1e-251215512133Transcription Regulator NC2 beta chain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096999.12e-86protein Dr1 homolog
RefseqXP_011097000.12e-86protein Dr1 homolog
SwissprotP495923e-69NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A4D8ZI501e-82A0A4D8ZI50_SALSN; Uncharacterized protein
STRINGMigut.D01587.1.p4e-80(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38202244
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]