PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100186430021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NAC
Protein Properties Length: 113aa    MW: 13046.4 Da    PI: 4.376
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100186430021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.96e-1747055127
                           NAM  55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyr 127
                                    ++wyf+s+r         +nr+t+sgyW++ g +++++s+ +g++vg+kk  +fy g  a++g kt+W+mhey+
  Ote100186430021|100186430021   4 GNKWYFYSRR--------TPNRITESGYWQSIGVEEPIYSSsGGQKVGIKKYSAFYIGdPASQGLKTNWIMHEYK 70 
                                   5789999887........579******************9988999**********8857899***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.7111102IPR003441NAC domain
SuperFamilySSF1019411.44E-21382IPR003441NAC domain
PfamPF023651.0E-10770IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MCEGNKWYFY SRRTPNRITE SGYWQSIGVE EPIYSSSGGQ KVGIKKYSAF YIGDPASQGL  60
KTNWIMHEYK DHSKWVLCRV YERDDDDDGG TELSCLDEVF LSLDDLDEIS LPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-1858474169NAC domain-containing protein 19
3swm_B7e-1858474169NAC domain-containing protein 19
3swm_C7e-1858474169NAC domain-containing protein 19
3swm_D7e-1858474169NAC domain-containing protein 19
3swp_A7e-1858474169NAC domain-containing protein 19
3swp_B7e-1858474169NAC domain-containing protein 19
3swp_C7e-1858474169NAC domain-containing protein 19
3swp_D7e-1858474169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553091.16e-53NAC domain-containing protein 104 isoform X2
SwissprotQ8GWK62e-41NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A2G9FYG12e-56A0A2G9FYG1_9LAMI; Uncharacterized protein
STRINGXP_009762857.14e-48(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37662447
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]