PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100186560001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GATA
Protein Properties Length: 302aa    MW: 34380 Da    PI: 8.0555
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100186560001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.71.1e-15223252635
                          GATA   6 ttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   +tkTp+WR gp g+ktLCnaCG++y++ +l
  Ote100186560001|100186560001 223 VTKTPQWRAGPLGSKTLCNACGVRYKSGRL 252
                                   69************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501148.655212248IPR000679Zinc finger, GATA-type
SMARTSM004015.5E-6222266IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-9223274No hitNo description
CDDcd002023.81E-10223265No hitNo description
PfamPF003202.3E-13223252IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-10223250IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MECFGIGAEM LKTGDEFLVV AGGVSGDDLF VDELLDFSND FEQEELQQQL HEPEEKELEG  60
KIACSVLQQD SPAPENSAVS ANDDFGLRVW RVWNGCPILW RTHFPTTPSP ENCRRTRRRR  120
RLPPLXXXXX XXXXXXXXXX XTPVQTKART KRTRTGARIW PVLSPSSSTS XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXVTKTPQWR AGPLGSKTLC  240
NACGVRYKSG RLLPEYRPAC SPTFSIELHS NNHRKVLEMR RKKEADGEVE IGSGLVQTVQ  300
NF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00404DAPTransfer from AT3G51080Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100952.14e-36GATA transcription factor 5-like
TrEMBLA0A2G9HGJ95e-35A0A2G9HGJ9_9LAMI; GATA transcription factor
STRINGXP_007156103.19e-35(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481