PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100186930102
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 445aa    MW: 47426.3 Da    PI: 8.4982
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100186930102genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.11.3e-121842226
                                  -S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                                  +++ C +++rtG+C yG+rC+F+H+
  Ote100186930102|100186930102 18 DEPDCIYYLRTGFCGYGNRCRFNHP 42
                                  6899********************9 PP
2zf-CCCH40.54.6e-136589327
                                  S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                                  ++lC++++rtG Ck+G++Ck++H++
  Ote100186930102|100186930102 65 EPLCKYYMRTGMCKFGASCKYHHPK 89
                                  79*********************96 PP
3zf-CCCH32.31.7e-10110135227
                                   -S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                   + ++C+++ +tG+Ck+G +Ck++H++
  Ote100186930102|100186930102 110 GVKECSYYIKTGHCKFGVTCKYHHPQ 135
                                   6789********************97 PP
4zf-CCCH38.61.7e-12276302127
                                   --S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                   +++++C++++rtG+Ck+G++Ck++H+p
  Ote100186930102|100186930102 276 PGQPECQYYLRTGECKFGASCKYHHPP 302
                                   5789*********************97 PP
5zf-CCCH35.81.4e-11324348327
                                   S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                    +lC+++a++G C++G++CkF H++
  Ote100186930102|100186930102 324 APLCSHYAQNGVCRFGPSCKFDHPM 348
                                   68*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5771644IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-51643IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-101842IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-62044IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-52242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.5076290IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-76289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-66590IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-96589IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-56788IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013108135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-6108136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098108136IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-7110135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.483275303IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-7275302IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-10277302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5279302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4281302IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-7321348IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338321349IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6323350IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-9324348IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5326346IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MRQMSLGEGP DSYPERPDEP DCIYYLRTGF CGYGNRCRFN HPLDRSAAMG ALRASGGEYP  60
ERIGEPLCKY YMRTGMCKFG ASCKYHHPKH GAGSSSPITL NIYGYPMRQG VKECSYYIKT  120
GHCKFGVTCK YHHPQPAGMQ MPAPGPLAGP AAVPTPSLYP TVQSPSVQSS QQYGVLHGNW  180
PVARPTMLTG SYVPGSYGPM LLAPGVVPVP GWSPYSAQVS HGGLQSTQPT VGAGSVYGIT  240
QLPPSSSTYT APYLSSTSYA GPLSSSQKDH VFPERPGQPE CQYYLRTGEC KFGASCKYHH  300
PPEWSAQKSI VLLSPMGLPM RPGAPLCSHY AQNGVCRFGP SCKFDHPMRA LSYSTSSSSL  360
TDMPVAPYPV GSTSATLAPS SSSSDLRPEH QSGFSKDAFS ANLSSTHSSS ASVGSTFSAS  420
MPTCEFGVHH SGQGTISSTV VSSSN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090931.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ84W911e-146C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A4D8Z2S60.0A0A4D8Z2S6_SALSN; Uncharacterized protein
STRINGMigut.G00186.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459