PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100187430011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 146aa    MW: 16129.8 Da    PI: 7.3877
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100187430011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28e-181461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT++Ed++l+++++ +G g+W++ ++  g+ R++k+c++rw +yl
  Ote100187430011|100187430011 14 KGAWTKDEDQRLINYIRAHGEGNWRSLPKSAGLLRCGKSCRLRWINYL 61
                                  79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-24569IPR009057Homeodomain-like
PROSITE profilePS5129422.562965IPR017930Myb domain
SMARTSM007172.6E-131363IPR001005SANT/Myb domain
PfamPF002492.9E-161461IPR001005SANT/Myb domain
SuperFamilySSF466892.41E-231587IPR009057Homeodomain-like
CDDcd001673.27E-121661No hitNo description
PROSITE profilePS500904.69362113IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.2E-67087IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKD EDQRLINYIR AHGEGNWRSL PKSAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDEIIIK LHSLLGNSGI DPQTXXXXXX XXXSAAAADN FRTAAPPPPS  120
KDADIVPTNE PAEIISFPTA DNSSSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-1713872699MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096483.12e-58myb-related protein 330
SwissprotP813953e-57MYB30_ANTMA; Myb-related protein 330
TrEMBLA0A059PRE84e-64A0A059PRE8_SALMI; MYB-related transcription factor
STRINGXP_010104477.13e-56(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]