PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100187630141

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

YABBY

Protein Properties

Length: 113aa MW: 12436.3 Da PI: 8.5021

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100187630141	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	85.4	1.6e-26	2	62	2	62
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaesh 62 ++ sse+vCy++Cn+Cnt lavsvP+ s+f +vtvrCGhC++llsvn+ q + ++ Ote100187630141\|100187630141 2 SMELSSENVCYINCNYCNTTLAVSVPFGSMFAIVTVRCGHCANLLSVNMGLLLQSVHLQDF 62 66789*******************************************9988776665553 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.4E-26	6	87	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MSMELSSENV CYINCNYCNT TLAVSVPFGS MFAIVTVRCG HCANLLSVNM GLLLQSVHLQ 60 DFQVQKQQFS GGGMEIRDGG SSSNRSRFSS LQVDAEQPKL APIRRKLFQG KIN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088989.1	1e-48	putative axial regulator YABBY 2 isoform X1
Refseq	XP_011088990.1	1e-48	putative axial regulator YABBY 2 isoform X1
TrEMBL	A0A0X9RCW2	2e-46	A0A0X9RCW2_MENSP; YABBY family protein 2
STRING	VIT_06s0009g00880.t01	6e-36	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163