PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100188030181

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LBD

Protein Properties

Length: 82aa MW: 9220.88 Da PI: 8.8855

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100188030181	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	43.2	1.1e-13	4	57	1	49
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkal 49 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a Ote100188030181\|100188030181 4 SCNGCRVLRKGCSENCSIRPCLewiksPDSQANATVFLAKFYGRAGLMNLVNAX 57 6*************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.599	3	82	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.9E-10	4	57	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 82 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLEWIKS PDSQANATVF LAKFYGRAGL MNLVNAXXXX 60 XXXXPWCAPI AHLIERWLIS IG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010693111.1	6e-33	PREDICTED: LOB domain-containing protein 41
Swissprot	Q9M886	6e-32	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2U1PPB1	4e-32	A0A2U1PPB1_ARTAN; Lateral organ boundaries domain-containing protein
STRING	XP_010693111.1	2e-32	(Beta vulgaris)
STRING	XP_004489144.1	6e-32	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21959	2	2