PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100189600151

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WRKY

Protein Properties

Length: 163aa MW: 18687.6 Da PI: 6.1193

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100189600151	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.3	4.1e-30	101	159	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 l+Dg++WrKYG+K+vk++++pr+YY+C+ +gC+vkk+ver+++d ++v++tYeg Hnhe Ote100189600151\|100189600151 101 LNDGFKWRKYGKKMVKNNQNPRNYYKCSVEGCSVKKRVERDNQDRRYVITTYEGIHNHE 159 58********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.9E-32	87	161	IPR003657	WRKY domain
SuperFamily	SSF118290	6.67E-27	94	161	IPR003657	WRKY domain
PROSITE profile	PS50811	29.895	96	161	IPR003657	WRKY domain
SMART	SM00774	2.6E-32	101	160	IPR003657	WRKY domain
Pfam	PF03106	3.3E-23	102	159	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MAQNYLNTNI FCDSSGYCPE TGGFEPSDFL HMEDDWLDGL PTDLSHLLNC TPNDSGVDPN 60 GTSYESSLEG NMNNRESDGR RDKKGTREKV AFKTKSDIEI LNDGFKWRKY GKKMVKNNQN 120 PRNYYKCSVE GCSVKKRVER DNQDRRYVIT TYEGIHNHEG PTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-24	85	162	1	78	Probable WRKY transcription factor 4
2lex_A	2e-24	85	162	1	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012847225.1	4e-49	PREDICTED: probable WRKY transcription factor 50
Swissprot	Q93WU9	3e-35	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A0D5YAG4	6e-60	A0A0D5YAG4_SALMI; WRKY protein
STRING	Migut.E01579.1.p	2e-48	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2124	24	62

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]