PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100190050001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 305aa    MW: 34677.4 Da    PI: 7.3444
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100190050001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind77.62.1e-24251102103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+y++++d+++++++sw e+  +fvv+ + efa+++Lp+yFkh+nf+SF       gF+k+  ++         weF+
  Ote100190050001|100190050001  25 FLTKTYQLVDDPATDHIVSWGEDDATFVVWRPPEFARDLLPNYFKHNNFSSF-------GFRKIVPDR---------WEFA 89 
                                   9**************************************************9.......9*****999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkkse 103
                                   ++ Fk+g+k+ll++i+r+k++
  Ote100190050001|100190050001  90 NEFFKRGEKHLLCDIHRRKTA 110
                                   ******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.8E-2717102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-4721107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.35E-2522107IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.3E-2125107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-112548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-116375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MALMLDNCDG ILLSLDNHKS VPAPFLTKTY QLVDDPATDH IVSWGEDDAT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFGFRK IVPDRWEFAN EFFKRGEKHL LCDIHRRKTA QPQVAVNHHH  120
HPITGQGFFP YTNRISISPP DSDDQQNNWR DXXXXXXXXX XXXXXXSFTA LSEDNERLRR  180
SNNILMSELA HMRKLAAAAA MLQKPLNNLI GYQQNPKQGN CFPNSFNAVS SLSSPSKTSQ  240
SSVTILEEAA EVEVCRTKLF GVPLSSPSSK KRSHSEFNSS MEMNKARMVL EKDDLGFNLM  300
PPSPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-152011016123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022879895.11e-148heat stress transcription factor B-4-like
SwissprotQ9C6356e-89HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A067LCE11e-130A0A067LCE1_JATCU; Uncharacterized protein
STRINGPOPTR_0002s12640.11e-128(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450