PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100190240051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GATA
Protein Properties Length: 305aa    MW: 33624.2 Da    PI: 7.5801
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100190240051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.91.6e-14219251131
                          GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyr 31 
                                   C++Cg+ +  Tp +Rrgp g++tLCnaCGl++ 
  Ote100190240051|100190240051 219 CQHCGVGEasTPAMRRGPAGPRTLCNACGLMWV 251
                                   *****99999*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513209.22689124IPR010399Tify domain
PfamPF062002.5E-692114IPR010399Tify domain
PfamPF062039.0E-14154195IPR010402CCT domain
PROSITE profilePS5101711.826154196IPR010402CCT domain
SMARTSM004019.6E-7213266IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.38E-9215254No hitNo description
Gene3DG3DSA:3.30.50.101.7E-12218253IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.61E-11218250No hitNo description
PfamPF003203.1E-12219251IPR000679Zinc finger, GATA-type
PROSITE patternPS003440219246IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MIRPRNVDPN LRNHHATRVP NPCRLTAPIL SPPSSSAMQS RMDAVKGMPI RVHENGGGFD  60
ADETMSSAED MSAPIAATPV SCQSSLRLSD SRSSELTISF EGEVYVFPAV TPEKFCCYWE  120
VRRLQPVFPA LEFLLQIDDK GADDVSSLPS VSRRIASLER FREKRKERCF DKKIRNTCRK  180
EVAQRMHRKN GQFASIKDTC KAADDDLDSG NSTNPKPVCQ HCGVGEASTP AMRRGPAGPR  240
TLCNACGLMW VNKEPLEIKP LAAEPVNSFC NQDEEETLDK LTNVSGAKLE IPANFYAQVP  300
NGLGT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092459.12e-98GATA transcription factor 19-like isoform X1
SwissprotQ10F252e-42GAT18_ORYSJ; GATA transcription factor 18
TrEMBLA0A022RFF44e-80A0A022RFF4_ERYGU; Uncharacterized protein
STRINGMigut.N01100.1.p6e-89(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]