PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100191540021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family E2F/DP
Protein Properties Length: 353aa    MW: 40033.5 Da    PI: 9.0138
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100191540021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP71.59.7e-231580171
                       E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                                  rkeksL+ll++kfl+l ++ + + ++l+ +a++L    v  +rRRiYDi+N+Le++++i+k++kne++ kg
  Ote100191540021|100191540021 15 RKEKSLGLLCTKFLRLHNHDSVDSISLDAAAHQL---GV--ERRRIYDIVNILEGIGVIKKRAKNEYTRKG 80
                                  79*****************999************...**..*************************98765 PP
2E2F_TDP69.92.9e-22136216171
                       E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                                   r+eksL+lltq+f kl+ +s+++i++l+ va +L+ +      +++k RR+YDi+NV+++++liek     + k+++rw+g
  Ote100191540021|100191540021 136 RREKSLGLLTQNFAKLFLCSDADIISLDGVALSLLGDthdrtAMRTKIRRLYDIANVFSSMGLIEKtrdpeSGKPAFRWIG 216
                                   689***************************************************************9999999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-231381IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.85E-151576IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.2E-261580IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023198.1E-201677IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.1E-21132217IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.3E-27136216IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.7E-18138216IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.24E-12138216IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MTSRDSRTRD PFYCRKEKSL GLLCTKFLRL HNHDSVDSIS LDAAAHQLGV ERRRIYDIVN  60
ILEGIGVIKK RAKNEYTRKG FGAVSGALEV LKEQGLKEGF NTYITDVSNE NERRQLPNSK  120
SKRRDKCSEL DKSEHRREKS LGLLTQNFAK LFLCSDADII SLDGVALSLL GDTHDRTAMR  180
TKIRRLYDIA NVFSSMGLIE KTRDPESGKP AFRWIGGERS SINGSSSALD GRNCKRAFGS  240
DITNTPVKKC NTNPSTEQHQ KHGSKDFVFG PFAPNLMNTE CDEYDGQIQN LDHLFCAYQP  300
QYSNKGKSIL YXXXXXXXXX XXXXXXXXXA IGDIFHHYAE AWNNWRGEAS DKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A6e-32152064226Transcription factor E2F8
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554916.11e-149E2F transcription factor-like E2FE isoform X1
TrEMBLA0A4D9B2061e-157A0A4D9B206_SALSN; Uncharacterized protein
STRINGMigut.H00175.1.p1e-129(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25222457