PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100191620051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WRKY

Protein Properties

Length: 119aa MW: 13008.9 Da PI: 9.9377

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100191620051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.4	1.1e-31	47	103	3	58
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 D ++WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYeg+Hnh Ote100191620051\|100191620051 47 DDFSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERALDDPTMLIVTYEGDHNH 103 99**********************998************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.8E-16	7	43	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	2.1E-33	33	103	IPR003657	WRKY domain
PROSITE profile	PS50811	29.585	40	103	IPR003657	WRKY domain
SuperFamily	SSF118290	4.45E-27	42	103	IPR003657	WRKY domain
SMART	SM00774	1.4E-36	45	105	IPR003657	WRKY domain
Pfam	PF03106	3.8E-27	47	103	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MDDGATAKCG GASSGSRCHC PKKKKSKLKR VVRVPAISLK MADIPPDDFS WRKYGQKPIK 60 GSPHPRGYYK CSSLRGCPAR KHVERALDDP TMLIVTYEGD HNHLHSNADA PPAPVLESS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-22	33	113	2	76	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid. {ECO:0000269\|PubMed:11449049}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027092449.1	1e-68	probable WRKY transcription factor 7
Swissprot	O22176	2e-56	WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBL	A0A2G9GX67	4e-69	A0A2G9GX67_9LAMI; Uncharacterized protein
TrEMBL	A0A4D9BD41	6e-69	A0A4D9BD41_SALSN; Uncharacterized protein
STRING	XP_009604893.1	1e-64	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1220	24	79

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Van Aken O, et al. Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases. Plant Physiol., 2016. 171(3): p. 2150-65 [PMID:27208304] Liu F, et al. Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection. Plant Biotechnol. J., 2018. 16(4): p. 911-925 [PMID:28929638]