PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100191660071

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

C2H2

Protein Properties

Length: 211aa MW: 23719.6 Da PI: 7.7415

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100191660071	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5.3e-06	121	140	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C+k+F+r n++ H+ Ote100191660071\|100191660071 121 FSCNICSKTFNRYNNMQMHM 140 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.77E-6	107	144	No hit	No description
PROSITE profile	PS50157	10.471	121	148	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	4.0E-5	121	140	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	123	143	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MDFLKFPLFY QHHHETVQCL PLLSRFTEEK DVKEDVDDEK IETVTVALHI GLPDIGEVDV 60 DREKGKRCSF DGGEDECSXX XXXXXXXXXR RRSSNGCNFS DDERRFWIPT PAQILVGPMQ 120 FSCNICSKTF NRYNNMQMHM WGHGSEFRKG PESLRXXXXX RCCGYRATAA PRAARTTSTT 180 PAQSPSRTSA PSRRTTSAST APGPTPAASP A

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022872292.1	4e-55	zinc finger protein WIP3-like
TrEMBL	A0A4D8ZLM0	2e-56	A0A4D8ZLM0_SALSN; Uncharacterized protein
STRING	VIT_06s0080g00270.t01	2e-48	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA462	24	133