PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100192040001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

GRAS

Protein Properties

Length: 257aa MW: 28594.9 Da PI: 9.8139

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100192040001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	248.9	2e-76	20	257	1	242
GRAS 1 lvelLlecAeavssgdle........laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn 73 lv++L++cAeav++++++ l++++ la ++ +m+++a+yf+eALa+r+++ +y p+ Ote100192040001\|100192040001 20 LVHTLMACAEAVQQEKMKlxxxxxxxXXXXLVKQVGLLAVSQVGAMRKVATYFAEALARRVYK----IY----PTXXXXXX 92 689*********99985555555566789***************************9....55....44444444 PP GRAS 74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgs 154 s+ l++ f+e+ P+lkf+h+taNqaIlea++g +rvH+iDf++ qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p++++ Ote100192040001\|100192040001 93 YSDILHM--HFYETGPYLKFAHFTANQAILEAFAGTNRVHVIDFSLRQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDN 171 6777776..4******************************************************************* PP GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvks 233 +++l+++g++La++Ae++gv+fef+ lv+++l+dl++++L+++p E++aVn+v++lhrll+++ ++e+ vL+ +ks Ote100192040001\|100192040001 172 SDALQQVGWKLAQVAEAIGVEFEFRGLVTNSLADLDVKMLDIRPggVETVAVNSVFELHRLLARPRAMEK----VLDSIKS 248 ****************************************888***********99999999....*** PP GRAS 234 lsPkvvvvv 242 +sPk+v+vv Ote100192040001\|100192040001 249 MSPKIVTVV 257 *****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.591	1	257	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.9E-74	20	257	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MAILQRRXVL VDSQDTGVRL VHTLMACAEA VQQEKMKLXX XXXXXXXXXL VKQVGLLAVS 60 QVGAMRKVAT YFAEALARRV YKIYPTXXXX XXYSDILHMH FYETGPYLKF AHFTANQAIL 120 EAFAGTNRVH VIDFSLRQGM QWPALMQALA LRPGGPPAFR LTGIGPPQPD NSDALQQVGW 180 KLAQVAEAIG VEFEFRGLVT NSLADLDVKM LDIRPGGVET VAVNSVFELH RLLARPRAME 240 KVLDSIKSMS PKIVTVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-32	27	257	26	249	Protein SCARECROW
5b3h_A	6e-32	27	257	25	248	Protein SCARECROW
5b3h_D	6e-32	27	257	25	248	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269\|PubMed:15347801}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097451.1	1e-139	DELLA protein GAI
Refseq	XP_012838438.1	1e-139	PREDICTED: DELLA protein GAI-like
Refseq	XP_027074537.1	1e-138	DELLA protein GAI-like
Refseq	XP_027078270.1	1e-138	DELLA protein GAI-like
Refseq	XP_027178624.1	1e-138	DELLA protein GAI-like
Swissprot	Q7Y1B6	1e-138	GAI_SOLLC; DELLA protein GAI
TrEMBL	A0A4D8YZF2	1e-144	A0A4D8YZF2_SALSN; DELLA protein
STRING	Migut.K00894.1.p	1e-138	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2126	24	62

Publications ? help Back to Top
Nir I, et al. The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure. Plant Cell, 2017. 29(12): p. 3186-3197 [PMID:29150547]