PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100192440111

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NF-YA

Protein Properties

Length: 191aa MW: 21359.8 Da PI: 9.3602

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100192440111	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.3	2.2e-32	106	162	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+kl +k rkpylheSRh hAlrR+Rg gGrF Ote100192440111\|100192440111 106 EEPVFVNAKQYHGILRRRQSRAKAESENKL-SKPRKPYLHESRHLHALRRARGMGGRF 162 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	4.6E-35	104	165	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.256	105	165	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.6E-27	107	162	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.5E-23	108	130	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	110	130	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.5E-23	139	162	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MTSSIHSPSD NYEAYEQQKP DESYVQPLPP AKGMCHPGTA PPAMQYASPA QVGTGNAQTA 60 YPYPDPYYRS IFAPYEAQPY PSQPMVQLQL MGIQQAGVPL PSEAVEEPVF VNAKQYHGIL 120 RRRQSRAKAE SENKLSKPRK PYLHESRHLH ALRRARGMGG RFQKKNDKTK EVGSDEKSQD 180 SSNLNSERDA S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-20	105	162	1	58	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096682.1	1e-100	nuclear transcription factor Y subunit A-7-like isoform X6
Swissprot	Q84JP1	2e-60	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A4D9A4N0	3e-97	A0A4D9A4N0_SALSN; Uncharacterized protein
STRING	Migut.M01893.1.p	3e-91	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6650	23	33

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]