PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100192970041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 75aa    MW: 8531.59 Da    PI: 8.9788
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100192970041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.8e-07951444
                                  S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
               Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                  WT+   + + +a + +  +   +W  +a+ +g g+++ ++k ++
  Ote100192970041|100192970041  9 WTPKQNKMFEKALAVYDQDtpdRWQNVANAVG-GKSAAEVKRHY 51
                                  *****************99*************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.7E-5557IPR001005SANT/Myb domain
SuperFamilySSF466892.34E-12863IPR009057Homeodomain-like
CDDcd001673.40E-6951No hitNo description
Gene3DG3DSA:1.10.10.604.7E-4961IPR009057Homeodomain-like
PfamPF002491.4E-5951IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MASNSISLWT PKQNKMFEKA LAVYDQDTPD RWQNVANAVG GKSAAEVKRH YDILVEDLKH  60
IESGNVPFPS YRPNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-309721174RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022884937.11e-38transcription factor RADIALIS-like
SwissprotQ1A1736e-34RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2G5EJ721e-37A0A2G5EJ72_AQUCA; Uncharacterized protein
STRINGAquca_007_00235.12e-38(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231