PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100193520041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

SRS

Protein Properties

Length: 209aa MW: 22581.1 Da PI: 8.0742

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100193520041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	164.4	6.5e-51	15	150	3	152
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkq 83 s +++C+dCGnqakkdC h+RCRtCCksrg++C thvkstWvp+a+rr r+++ + ++ + + +++ Ote100193520041\|100193520041 15 SSSSRCHDCGNQAKKDCGHSRCRTCCKSRGLHCPTHVKSTWVPVAQRRPRHHNVMLQ-PQHHH--Q-----------ISAV 81 56789******************************************95544332.22212..1...........1222 PP DUF702 84 salsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152 + ++ ++++ le +lP ev +a+frcvrvss+d+ +e+aYqt+vsigGhvf GiLydqG+ Ote100193520041\|100193520041 82 HGPNPKRCRENQPALGLEEGDLPGEVCFPAIFRCVRVSSMDNVVDEYAYQTSVSIGGHVFTGILYDQGA 150 333333444556677888899*********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	9.9E-54	17	150	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.3E-25	20	61	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.3E-22	103	149	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MRREEIGGIN SSSSSSSSRC HDCGNQAKKD CGHSRCRTCC KSRGLHCPTH VKSTWVPVAQ 60 RRPRHHNVML QPQHHHQISA VHGPNPKRCR ENQPALGLEE GDLPGEVCFP AIFRCVRVSS 120 MDNVVDEYAY QTSVSIGGHV FTGILYDQGA VESEGTGNYL TGGSSSGGIG FLQQPNFLNS 180 TSATATGTTP SPYPSSFCAF TTTTSSQFF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092834.1	6e-74	protein SHI RELATED SEQUENCE 3-like
Swissprot	Q9XGX0	3e-49	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A4D8YQ67	1e-117	A0A4D8YQ67_SALSN; Uncharacterized protein
STRING	XP_009785993.1	5e-67	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4156	24	45

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]