PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100194070001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LBD

Protein Properties

Length: 167aa MW: 18961.6 Da PI: 6.2949

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100194070001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.6	2.9e-40	11	109	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+l+r+C+++C +apyf +++pkkfa vhk+FGasnv+k+l+++ ee+red+++slv+eAe+r++dPvyG++g i Ote100194070001\|100194070001 11 SCAACKFLKRRCTPNCQFAPYFRSDEPKKFAKVHKVFGASNVSKILNEVAEEQREDTVNSLVFEAEVRLQDPVYGCIGAIA 91 6****************************************************************************** PP DUF260 82 klqqqleqlkaelallke 99 +lq+++ +l+++l l+++ Ote100194070001\|100194070001 92 SLQHKMVELQHDLILARA 109 *********9988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.019	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-39	11	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MKSQEPRSTS SCAACKFLKR RCTPNCQFAP YFRSDEPKKF AKVHKVFGAS NVSKILNEVA 60 EEQREDTVNS LVFEAEVRLQ DPVYGCIGAI ASLQHKMVEL QHDLILARAR LACYVEQHQQ 120 SAFFDDHHNH LNMAPLLDIP EPSAAAMVDI FDHDNLPLDQ FSPFQFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-42	6	114	6	114	LOB family transfactor Ramosa2.1
5ly0_B	7e-42	6	114	6	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076828.2	2e-97	LOB domain-containing protein 21-like
Swissprot	Q9SRL8	1e-60	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A4D8Z4V0	3e-84	A0A4D8Z4V0_SALSN; Uncharacterized protein
STRING	XP_009630762.1	5e-71	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]