PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100194950011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

TCP

Protein Properties

Length: 316aa MW: 34968.2 Da PI: 7.8042

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100194950011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	104.3	2e-32	54	187	2	102
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................. 65 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ + Ote100194950011\|100194950011 54 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLqfpqgsllsmvnashqi 134 689*************************************************************66666666554444444 PP TCP 66 .................ssssasec....eaesssssasnsssg.kaaksaakskksqk 102 + + +++ +sssa+n+ ++ ++++ + ++q+ Ote100194950011\|100194950011 135 rplddqsnkqgisgklkD------VsaerNQNWESSSADNQDINaYVSTENFSATRQQN 187 443332222222221110......01111222222222222222222222223333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	32.019	56	114	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.5E-27	56	181	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MISRETDFTK QESSTSTTDT AQNFNIINGG ASSSSTSSWS RLRDPRIVRV SRAFGGKDRH 60 SKVCTVRGLR DRRVRLSVPT AIQLYDLQDR LGLNQPSKVV DWLLNAAKHE IDELPPLQFP 120 QGSLLSMVNA SHQIRPLDDQ SNKQGISGKL KDVSAERNQN WESSSADNQD INAYVSTENF 180 SATRQQNPSS LISSLMNTSS SSIPINSFVR WDPSNLTLSQ SHPSRSPGSS PXXXXXXXXX 240 EDWHNFSLVY QPAAGMSAQP YFHSQISASN AEFDAKHLNF QSSLQLSNVE SSTQPARPVQ 300 FNMTANLLPS QNNDGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-17	61	115	1	55	Putative transcription factor PCF6
5zkt_B	1e-17	61	115	1	55	Putative transcription factor PCF6
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099021.1	1e-101	transcription factor TCP5-like
Refseq	XP_011099023.1	1e-101	transcription factor TCP5-like
TrEMBL	A0A2Z7CLP8	3e-72	A0A2Z7CLP8_9LAMI; Uncharacterized protein
STRING	Migut.H00617.1.p	5e-65	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA821	24	99