PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100195310031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WRKY

Protein Properties

Length: 223aa MW: 24381.7 Da PI: 8.3785

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100195310031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.9	3.3e-31	119	177	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Ote100195310031\|100195310031 119 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILTTTYEGNHNHP 177 7*********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-33	103	179	IPR003657	WRKY domain
SuperFamily	SSF118290	5.36E-28	111	179	IPR003657	WRKY domain
PROSITE profile	PS50811	28.897	113	179	IPR003657	WRKY domain
SMART	SM00774	4.1E-36	118	178	IPR003657	WRKY domain
Pfam	PF03106	7.1E-27	120	177	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MFPVDSPLAQ HTVVLGEVDF FTVKKPPIDH HFVKEDINGT TELDVNKTKS EDEQVGVKVP 60 RQLLELSPGR ANRIINNDQS GSSSEERSQN HEPETKPAEP TMRKARVSVR ARSQAPMISD 120 GCQWRKYGQK MAKGNPCPRA YYRCTMAVGC PVRKQVQRCA EDRTILTTTY EGNHNHPLPP 180 AAMAMASTTS AAANMLLSGS TASADGLMNP SILATTMLPC SSN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-23	105	181	1	76	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269\|PubMed:25733771}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012472519.1	3e-79	PREDICTED: probable WRKY transcription factor 31
Swissprot	Q9XEC3	4e-75	WRK42_ARATH; WRKY transcription factor 42
TrEMBL	A0A0D5YA08	1e-79	A0A0D5YA08_SALMI; WRKY protein
STRING	Gorai.001G094300.1	1e-78	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA945	24	92