PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100195580001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 113aa    MW: 12770.4 Da    PI: 9.6835
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100195580001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-053355123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C++C + F ++  L  H++ H
  Ote100195580001|100195580001 33 FSCNYCRRKFYSSQALGGHQNAH 55
                                  89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.05E-73060No hitNo description
PROSITE profilePS5015711.0533360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MPMNDDEANT SLNLSLSSRK SRGVALGGSD RVFSCNYCRR KFYSSQALGG HQNAHKLERT  60
LAKKTTEFNS AVRPHSASID RQGHLPMPIF LRREIITYAH EDEISHLDLS LRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079434.14e-27zinc finger protein 2-like
SwissprotQ392614e-19ZFP2_ARATH; Zinc finger protein 2
TrEMBLA0A4D8ZVG67e-32A0A4D8ZVG6_SALSN; Uncharacterized protein
TrEMBLA0A4D9AH352e-31A0A4D9AH35_SALSN; Uncharacterized protein
STRINGXP_009798282.14e-25(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88762128