PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100196230021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GATA
Protein Properties Length: 191aa    MW: 22008.8 Da    PI: 6.0141
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100196230021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.24.2e-17110142133
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                                   Cs+C + +Tp+WR gp g  tLCnaCGl+y+  
  Ote100196230021|100196230021 110 CSHCEAEDTPQWRIGPLGRNTLCNACGLRYKVG 142
                                   ******************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.38E-13102153No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14103142IPR013088Zinc finger, NHR/GATA-type
SMARTSM004011.1E-14104154IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.27104141IPR000679Zinc finger, GATA-type
CDDcd002025.66E-13109160No hitNo description
PfamPF003208.8E-15110143IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MAIDFSKVNF HYNNENNDAQ DDLNTNYLET GLCVPHDRLE DLTFSTNFIN NDLIRLDDVN  60
VDNNEFIQKL HSNFGPAXXX XXXXXXXXXX XXLRKDSRRI MFQKKEGIKC SHCEAEDTPQ  120
WRIGPLGRNT LCNACGLRYK VGKLVDNYRP AASPSFDSAK HSNFYRRLMR DGDCICDEKN  180
IGEDQSGKIK D
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57761935