PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100196680061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 407aa    MW: 45651.4 Da    PI: 8.8932
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100196680061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000378099221
                                  EETTTTEEESSHHHHHHHHH CS
                       zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                                  +C+ Cgk F ++  L  H++
  Ote100196680061|100196680061 80 SCKECGKAFQSWKALFGHMK 99
                                  6******************7 PP
2zf-C2H210.80.0016329351123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++Cp+C k F++   L  H r+H
  Ote100196680061|100196680061 329 HECPICFKIFPSGQALGGHKRSH 351
                                   79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.21E-6831No hitNo description
PROSITE profilePS501579.39931IPR007087Zinc finger, C2H2
PfamPF139123.4E-4932IPR007087Zinc finger, C2H2
SMARTSM003550.56931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.21E-674101No hitNo description
PROSITE profilePS5015710.1879102IPR007087Zinc finger, C2H2
SMARTSM003550.01879101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.1E-481102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.8E-781101IPR007087Zinc finger, C2H2
PROSITE profilePS501579.619263290IPR007087Zinc finger, C2H2
SuperFamilySSF576671.63E-6263285No hitNo description
PfamPF139125.4E-11263287IPR007087Zinc finger, C2H2
SMARTSM003550.12263285IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280265285IPR007087Zinc finger, C2H2
SuperFamilySSF576671.63E-6324351No hitNo description
PROSITE profilePS501578.787329351IPR007087Zinc finger, C2H2
PfamPF139122.3E-10329352IPR007087Zinc finger, C2H2
SMARTSM003550.19329351IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280331351IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MEKDQEQKHT CKFCNKKFQC GRSLGGHMRS HLITISSSSD HRKNDENAPM KKLPPLSEKK  60
ISKPTKPHNK DDRNLIQEKS CKECGKAFQS WKALFGHMKC HSVNGNTKTT TTNTNCLDED  120
SWTMDSQSDS EAATSCRKKR SDRMVKRYTA TTASSSLTIA NSVSEMDQHE QEEVAMSLII  180
LSRDKTEWGG LNSFVDSSDN SPQKTRSVKQ LEVNALKDEA GIEFEVNSPK IKRSDHDQFE  240
GKKSVSRKRK AQIPSSHDLI SKFRCSICKK DFQSYQALGG HRASHKKFKG CCAPRSDEDN  300
SLETENSHNQ SENQTSEKAE VGLKKSKDHE CPICFKIFPS GQALGGHKRS HLIMDQGKND  360
AATPKKPMTE KIRGFLDLNL PAPAEEECNE FKPWWIGAGP LLGLLSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072829.11e-123zinc finger protein ZAT4-like
TrEMBLA0A2G9HIF71e-130A0A2G9HIF7_9LAMI; Uncharacterized protein
STRINGXP_009623743.11e-89(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241