PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100197070011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family SBP
Protein Properties Length: 212aa    MW: 23707.4 Da    PI: 8.2458
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100197070011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP113.31.4e-3526911378
                                  T--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                           SBP 13 eakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
                                  +a +yhrrhkvCe+h+kap+v+v g+eqrfCqqCsrfh l efDe+krsCrrrLa+hnerrrk+++
  Ote100197070011|100197070011 26 QAVDYHRRHKVCEMHAKAPKVVVLGMEQRFCQQCSRFHGLAEFDEAKRSCRRRLAGHNERRRKSSQ 91
                                  5679***********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114127.196789IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.02E-322693IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.102.8E-262676IPR004333Transcription factor, SBP-box
PfamPF031101.9E-272688IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
VPQVGEEALL RGSHSAAGVH HQQEGQAVDY HRRHKVCEMH AKAPKVVVLG MEQRFCQQCS  60
RFHGLAEFDE AKRSCRRRLA GHNERRRKSS QEHNSLARKN YQGGQVVNNS ECALSLLSPT  120
PWTTSSPDLP ARCSAALREL IAENRASLLG CRQLFNPNHF PENRGHVTLN LMHAQESAFA  180
LLSPHNNNDN RSSQEDGDAA DCSDLWKLPL GY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-2830882684squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090065.14e-77squamosa promoter-binding-like protein 7 isoform X2
SwissprotQ01JD18e-48SPL7_ORYSI; Squamosa promoter-binding-like protein 7
TrEMBLA0A2G9HWM93e-75A0A2G9HWM9_9LAMI; Uncharacterized protein
STRINGMigut.B01573.1.p2e-51(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA134081417