PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100197490041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB_related

Protein Properties

Length: 205aa MW: 23964.1 Da PI: 7.6634

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100197490041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.4	3.3e-18	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++vk++G g+W+ ++r g++R +k+c++rw +yl Ote100197490041\|100197490041 16 KGPWTAEEDRLLTEYVKLHGEGRWNNVSRLAGLKRNGKSCRLRWVNYL 63 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-22	11	66	IPR009057	Homeodomain-like
PROSITE profile	PS51294	23.98	11	67	IPR017930	Myb domain
SMART	SM00717	3.5E-16	15	65	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-16	16	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.98E-23	17	90	IPR009057	Homeodomain-like
CDD	cd00167	2.01E-11	18	63	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.1E-7	67	89	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MSQDMGWGAV NEGWRKGPWT AEEDRLLTEY VKLHGEGRWN NVSRLAGLKR NGKSCRLRWV 60 NYLRPDLKRG QITPHEERII LELHARWGNS AEKTRARLLR KQQFQLXXXX XXXREQDQMD 120 MRKIIASLVD ENENGVPNFS QLRQEMVYPS ASSDENSMIG NYATAPEAWT EEIVWDGLWN 180 WGDLHGNYIT AKPNYNQNFA SSTFY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	5e-14	16	89	27	99	MYB TRANSFORMING PROTEIN
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022849439.1	6e-75	transcription factor WER-like
Refseq	XP_022849440.1	6e-75	transcription factor WER-like
TrEMBL	A0A2G9FY60	1e-75	A0A2G9FY60_9LAMI; Transcription factor, Myb superfamily
STRING	cassava4.1_013947m	3e-64	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154