PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100197660071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 654aa    MW: 73464.3 Da    PI: 7.5852
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100197660071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.6e-193489156
                                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                  r++  ++t++q++++ee++++ ++p++++r+eL+++lg++  qVk+WFqN+R+++k
  Ote100197660071|100197660071 34 RKRYNRHTPQQIQIMEEFYKEFPHPDEKQRKELSRQLGIEPVQVKFWFQNKRTQMK 89
                                  677789***********************************************999 PP
2START167.87.5e-531833991206
                                   HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGG CS
                         START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddke 70 
                                   ela +a++el++ a+++ep+Wv s+      +n++e+ + f++  v       +++ea+r+s++v++ +++ ve+l+d+  
  Ote100197660071|100197660071 183 ELATAAMEELMRVAQLGEPLWVASVdrhsYVLNQEEYFRAFSR--VfgpttngFKSEASRESVLVPASAVDIVEILMDVE- 260
                                   57889********************9888889*********76..44599999***************************. PP

                                   CT-TT-S....EEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE CS
                         START  71 qWdetla....kaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvR 144
                                   +W++ +a    +a+ l+v+ss   g++   v+ + ++sp+vp R++ fvR++r++ +g+w++vdvS+d+  ++p    +  
  Ote100197660071|100197660071 261 RWTNVFAgvvaRATNLQVVSSRpdGTYNDVVQVFHVPSPMVPtRESFFVRQCRRHVDGTWAVVDVSLDQLHPNP----FNT 337
                                   *******************98888*************************************************9....788 PP

                                   -EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                         START 145 aellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                   ++++pSg+li++++ng+skv+wvehv++++   h+++++l+  gla+ga++wva l+ +c++
  Ote100197660071|100197660071 338 CRRRPSGCLIQDMPNGYSKVIWVEHVEVEEGGGHSIYKPLIAAGLAFGARRWVAILDGYCQR 399
                                   889******************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-182273IPR009057Homeodomain-like
SuperFamilySSF466892.01E-172696IPR009057Homeodomain-like
PROSITE profilePS5007116.2613191IPR001356Homeobox domain
SMARTSM003891.7E-163395IPR001356Homeobox domain
CDDcd000862.15E-163392No hitNo description
PfamPF000461.9E-163489IPR001356Homeobox domain
PROSITE patternPS0002706689IPR017970Homeobox, conserved site
Gene3DG3DSA:1.10.10.605.2E-474117IPR009057Homeodomain-like
PROSITE profilePS5084836.806174402IPR002913START domain
CDDcd088753.58E-96180398No hitNo description
SuperFamilySSF559614.89E-28183399No hitNo description
SMARTSM002348.8E-39183399IPR002913START domain
PfamPF018522.8E-44184399IPR002913START domain
Gene3DG3DSA:3.30.530.203.1E-4236365IPR023393START-like domain
SuperFamilySSF559612.17E-19419648No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MSDEREASNI NSKALQIDNE AQAESSDNNS RVKRKRYNRH TPQQIQIMEE FYKEFPHPDE  60
KQRKELSRQL GIEPVQVKFW FQNKRTQMKT QHEHKENNQL RIENEKLRAE NLRFREALSN  120
ASCPNCGVSA LREQSFRQFV NKPMMSSMES PSTSTPRSSA TRNLWCWMNN EAGNEDYRTV  180
VIELATAAME ELMRVAQLGE PLWVASVDRH SYVLNQEEYF RAFSRVFGPT TNGFKSEASR  240
ESVLVPASAV DIVEILMDVE RWTNVFAGVV ARATNLQVVS SRPDGTYNDV VQVFHVPSPM  300
VPTRESFFVR QCRRHVDGTW AVVDVSLDQL HPNPFNTCRR RPSGCLIQDM PNGYSKVIWV  360
EHVEVEEGGG HSIYKPLIAA GLAFGARRWV AILDGYCQRL LVGLVPPHDA NYLVGNHQGR  420
KSMLKVAERM VSKFCCGVNA SISNTWTSIT GFGNSSDNIK IMTRKNVNDL SMPLGFHLSI  480
ATSLWLPMPP KRVFDYLRDH NTRKEWDMHL NGDVEEMAHI ASGDEEGNRV TMFQIKGRNS  540
SSNQILIQES RKDPTASYVV YAPIDVASAN IVLGGGDPSR LPLLPSGFAI LPDGPTRGSY  600
GRTAQTETGG SLLTVALQVL VDSTPDVDLS SGSVAVVYKI ICDIMNKIKQ ALVP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552078.10.0homeobox-leucine zipper protein ROC1-like isoform X1
SwissprotQ6ZAR00.0ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A022QDY20.0A0A022QDY2_ERYGU; Uncharacterized protein
STRINGMigut.H01063.1.p0.0(Erythranthe guttata)
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  3. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  4. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]