PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100198110081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family SBP
Protein Properties Length: 488aa    MW: 53283.6 Da    PI: 8.5814
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100198110081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.74.6e-40216293178
                                   --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                   +CqvegC++dls ak+yhr+h+vC++hsk+p+v+v g+e+rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+
  Ote100198110081|100198110081 216 CCQVEGCNVDLSLAKDYHRKHRVCDAHSKCPKVIVGGRERRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPQQ 293
                                   6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-32209278IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.3214291IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-37215296IPR004333Transcription factor, SBP-box
PfamPF031101.2E-30217290IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MLLLVTNIYL GAVQLGDCRF PPGTTNSPLQ HSFLDLIWRP VYDAAIRLSC LYEPLHGDGM  60
ECKVGLGXXX XXXXXGSKAI ESPKNLQLAD WTIVDDGSFN LSATNCGNSG SDDKLASSAK  120
SSISASTDSS CKDGMQTSIF KLTASDGIEL SGTSPTAETS VGSAEALLGL KLGKRTYFEN  180
SSGGGGAVKN ASFPVAPPPP PTPKKTRSSG QNAPVCCQVE GCNVDLSLAK DYHRKHRVCD  240
AHSKCPKVIV GGRERRFCQQ CSRFHSLSEF DEKKRSCRRR LSDHNARRRK PQQETIQFNP  300
PRLSTPFYGG TQQMNFLLNN SPLVHSRAPT NSWNNSRFTL TKGCSLKSDG DDEQLRMPGI  360
KLPQPINMQN SHNGFLASKN PLALNTVSKG SSVMSSLDAA PEYRRALSLL SSNSWNSCIP  420
EPVHQLHENG SGSIHPMVHG IPEGVPFSXX XXXXXFWPTX XXXXXXXXXX QSFKPPYDAA  480
DFYSNVLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-29208290284squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071232.11e-162squamosa promoter-binding-like protein 3
RefseqXP_020547500.11e-162squamosa promoter-binding-like protein 3
RefseqXP_020547501.11e-162squamosa promoter-binding-like protein 3
TrEMBLA0A075FEU71e-174A0A075FEU7_SALMI; SQUAMOSA promoter binding protein-like 2 (Fragment)
STRINGMigut.K00951.1.p1e-122(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41292444