PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100198120061

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

Trihelix

Protein Properties

Length: 258aa MW: 27627.1 Da PI: 10.1268

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100198120061	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	100.2	1.7e-31	56	140	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rW++qe+laL+++r++m+ ++r+++lk+plWeevs+km+e gf+rs+k+Ckek+en+ k++k++k+g+ ++++++s +++ Ote100198120061\|100198120061 56 RWPRQETLALLKIRSDMDVTFRDASLKGPLWEEVSRKMAELGFQRSAKKCKEKFENVFKYHKRTKDGRASKSDGKS--YRF 134 8*******************************************************************866665..* PP trihelix 82 fdqlea 87 fdqlea Ote100198120061\|100198120061 135 FDQLEA 140 ****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0052	53	115	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.829	55	113	IPR017877	Myb-like domain
Pfam	PF13837	1.9E-20	55	140	No hit	No description
CDD	cd12203	1.10E-27	57	120	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MLGVAGLMSS SAVDGAAAER GGGSGGSSEV GASSSMAVGG VGEENERIGG GGGGNRWPRQ 60 ETLALLKIRS DMDVTFRDAS LKGPLWEEVS RKMAELGFQR SAKKCKEKFE NVFKYHKRTK 120 DGRASKSDGK SYRFFDQLEA XXLENTSPNH FTXXXXXXXX XXXXXXXSTV PIPSHVTVPS 180 ASPIPLSVVP PKMVTINAIN SSSFQPSQPQ LQPQLVASAP PPPXXXXXXX XXXXXXXXTR 240 TYSGGAGGSG NGKTIWRD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074760.1	1e-69	trihelix transcription factor GT-2-like
TrEMBL	A0A2G9GE44	3e-64	A0A2G9GE44_9LAMI; Transcription factor GT-2
STRING	Migut.C01017.1.p	1e-58	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2402	24	59