PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100199080091

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 91aa MW: 10261.6 Da PI: 9.335

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100199080091	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22	3e-07	19	59	15	54
HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +i + ++L +llP+ +s+ +s+K s +L+++++YI++L Ote100199080091\|100199080091 19 QIIDLVSKLHQLLPEiRSSRRSTKASANKVLQETCNYIRNL 59 56677799*******************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.08	4	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.2E-7	19	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-4	19	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-7	20	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 91 aa Download sequence Send to blast
MSGRRSRQSS NATRITDDQI IDLVSKLHQL LPEIRSSRRS TKASANKVLQ ETCNYIRNLH 60 KEVDDLSERL SQLLSSIDAD SPEAAIIRSL I

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269\|PubMed:16527868}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016559055.1	2e-46	PREDICTED: transcription factor PRE6-like
Swissprot	Q9LJX1	3e-44	PRE5_ARATH; Transcription factor PRE5
TrEMBL	A0A2G9I4F9	6e-50	A0A2G9I4F9_9LAMI; Uncharacterized protein
STRING	PGSC0003DMT400017748	3e-45	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA353	24	161