PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100199080181
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 259aa    MW: 29421.8 Da    PI: 6.8906
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100199080181genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.7e-1869122356
                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Ote100199080181|100199080181  69 KKRRLNLEQVKALEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 122
                                   4557899**********************************************9 PP
2HD-ZIP_I/II131.43.4e-4268158191
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   ekkrrl+ eqvk+LE+sFe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+++alk++n++L+
  Ote100199080181|100199080181  68 EKKRRLNLEQVKALEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDILKRQFEALKADNDALK 148
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreel 91 
                                   +++++L+++l
  Ote100199080181|100199080181 149 SQNQKLHSQL 158
                                   *******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.28E-1953126IPR009057Homeodomain-like
PROSITE profilePS5007116.76364124IPR001356Homeobox domain
SMARTSM003894.1E-1867128IPR001356Homeobox domain
PfamPF000463.1E-1569122IPR001356Homeobox domain
CDDcd000864.68E-1669125No hitNo description
Gene3DG3DSA:1.10.10.602.5E-1971131IPR009057Homeodomain-like
PRINTSPR000319.6E-695104IPR000047Helix-turn-helix motif
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PRINTSPR000319.6E-6104120IPR000047Helix-turn-helix motif
PfamPF021835.6E-16124164IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAFLPIAAES IFRNHENSHF PSSSPQDFHG VPDFLMRRSM SFSDMNPATE EFPADDEGSD  60
DGSQMLGEKK RRLNLEQVKA LEKSFELGNK LEPERKMQLA RALGLQPRQI AIWFQNRRAR  120
WKTKQLEKDY DILKRQFEAL KADNDALKSQ NQKLHSQLLG LKTRESTGSG AINLNKENEW  180
SNGSESSCEV NLKTSSTTDS GRLYLSQRSK LHAAGFPAAS LTPPQLPVSN DCSYGNMFGG  240
IQETQEFWPW SDQHHNNFQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098601.11e-121homeobox-leucine zipper protein HOX21
SwissprotQ8LC035e-68ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A2G9G0R51e-120A0A2G9G0R5_9LAMI; Uncharacterized protein
STRINGMigut.H00906.1.p1e-104(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]