PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100199310001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ERF
Protein Properties Length: 148aa    MW: 17132.3 Da    PI: 9.7484
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100199310001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-1990140256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                    y+GVr+++ +g+WvAeIr p +   r r++lg+++++e Aa a+++a+ kl+ge
  Ote100199310001|100199310001  90 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDSPEAAAYAYDRAAYKLRGE 140
                                   59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.54E-2289148No hitNo description
SuperFamilySSF541711.11E-2290147IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-3090147IPR001471AP2/ERF domain
PROSITE profilePS5103222.94590147IPR001471AP2/ERF domain
SMARTSM003802.6E-3090148IPR001471AP2/ERF domain
PRINTSPR003673.4E-1391102IPR001471AP2/ERF domain
PfamPF008478.9E-1491140IPR001471AP2/ERF domain
PRINTSPR003673.4E-13129148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MSRIQENIPF FTENNNSEIG LSLSHLILNS NSNTLDSIFS KCYELNPVLD PLGSSVYLQQ  60
RDLINQFSIP RISAQSQPNG LGYMQRNSKL YRGVRQRHWG KWVAEIRLPQ NRMRVWLGTY  120
DSPEAAAYAY DRAAYKLRGE YARLNFPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1987147263ATERF1
3gcc_A2e-1987147263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101035.13e-51LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF061
SwissprotQ9C7W21e-32ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A4D9AEW61e-59A0A4D9AEW6_SALSN; EREBP-like factor
STRINGGorai.007G026200.17e-46(Gossypium raimondii)
STRINGMigut.A00662.1.p7e-46(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]