PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100200520041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family LFY
Protein Properties Length: 187aa    MW: 21701.7 Da    PI: 9.4443
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100200520041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY329.38.7e-1013139220356
                       FLO_LFY 220 sgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkP 300
                                   +g +g+erqrehPfivtepgevargkknGLDYLf+LyeqCrefL+qvq+iakerGekcPtkvtnqvfryakkaga+yinkP
  Ote100200520041|100200520041   3 GGGGGNERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVTNQVFRYAKKAGANYINKP 83 
                                   577899*************************************************************************** PP

                       FLO_LFY 301 kmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdid 356
                                   kmrhYvhCYalhcLdee+snalrrafkergenvGawrqacykplva+aarqgwdi 
  Ote100200520041|100200520041  84 KMRHYVHCYALHCLDEETSNALRRAFKERGENVGAWRQACYKPLVAVAARQGWDIX 139
                                   ******************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016988.9E-973139IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
NCGGGGGNER QREHPFIVTE PGEVARGKKN GLDYLFHLYE QCREFLIQVQ NIAKERGEKC  60
PTKVTNQVFR YAKKAGANYI NKPKMRHYVH CYALHCLDEE TSNALRRAFK ERGENVGAWR  120
QACYKPLVAV AARQGWDIXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX RREEXXXXXX  180
XXXXXXS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A6e-8871382133PROTEIN LEAFY
2vy2_A6e-8871382133PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that act to specify determinacy in the progenitor cells for both flowers and leaves.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073600.24e-94LOW QUALITY PROTEIN: floricaula protein
SwissprotQ405041e-92FL1_TOBAC; Floricaula/leafy homolog 1
TrEMBLA5A4R23e-96A5A4R2_PLESU; Floricaula
STRINGXP_009614003.16e-91(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66682333