PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100200710011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 177aa    MW: 19793.9 Da    PI: 9.9556
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100200710011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-1465109347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +WT+eE+ +++ + ++lG+g+W+ I+r +  +Rt+ q+ s+ qky
  Ote100200710011|100200710011  65 PWTEEEHRRFLMGLEKLGKGDWRGISRNFVSTRTPTQVASHAQKY 109
                                   8*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.55258114IPR017930Myb domain
SuperFamilySSF466893.14E-1859115IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-1862113IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.4E-1262108IPR009057Homeodomain-like
SMARTSM007172.5E-1162112IPR001005SANT/Myb domain
CDDcd001671.67E-1065110No hitNo description
PfamPF002492.1E-1265109IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
GGGGVIKLFG VQLDISSSIP IKKSFSFDCS LTXXXXXXXX XXTNKSSLGY HSDHAPPSHT  60
RKGVPWTEEE HRRFLMGLEK LGKGDWRGIS RNFVSTRTPT QVASHAQKYF LRQSSIHNKK  120
RRSSLFDMAG GSEQSXXXXX XXXXXXXCVD DFPMELELTL SAHHQSSSSL FPPITVT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093715.17e-54transcription factor KUA1-like
TrEMBLA0A4D9A5S43e-48A0A4D9A5S4_SALSN; Uncharacterized protein
STRINGEOY304922e-46(Theobroma cacao)
STRINGMigut.J00595.1.p3e-46(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33852147