PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100200720121
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ERF
Protein Properties Length: 162aa    MW: 18457.8 Da    PI: 6.9477
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100200720121genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.24.7e-14758254
                           AP2  2 gykGVrwdkkrgrWv...AeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                                  +y+GVr+++ +g+W     eIr+p     ++r++lg+f tae+Aa a+++a++ + 
  Ote100200720121|100200720121  7 RYRGVRQRH-WGSWXxxxXEIRHPL---LKTRIWLGTFETAEDAAMAYDEAARIMC 58
                                  69******9.*****7667777752...46**********************9775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.11E-28666No hitNo description
PROSITE profilePS5103217.385767IPR001471AP2/ERF domain
PfamPF008471.2E-8758IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-29767IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-17768IPR016177DNA-binding domain
SMARTSM003804.9E-31773IPR001471AP2/ERF domain
PRINTSPR003675.1E-11819IPR001471AP2/ERF domain
PRINTSPR003675.1E-113349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWX XXXXEIRHPL LKTRIWLGTF ETAEDAAMAY DEAARIMCGS  60
RARTNFSYDQ XXXXXXXKLL SATLMAKLQK CHVASLSMSK KPAVDERMEA EKTRSFEGGK  120
KSGNEGGSMQ EYKSVEDDDG IEQMIQELLD HGSVELSSVT EN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-15866662ATERF1
3gcc_A1e-15866662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251328.12e-65PREDICTED: ethylene-responsive transcription factor ERF003
SwissprotQ94AW53e-54ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A2G9HMB71e-65A0A2G9HMB7_9LAMI; Uncharacterized protein
STRINGXP_004498778.11e-58(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]