PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100201140021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 126aa    MW: 14350 Da    PI: 7.2129
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100201140021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000122547123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+C  C++ F++   L  H++ H
  Ote100201140021|100201140021 25 YECVFCKRGFNTAQALGGHMNIH 47
                                  99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.13E-62351No hitNo description
PROSITE profilePS5015710.5542552IPR007087Zinc finger, C2H2
PfamPF139121.4E-52549IPR007087Zinc finger, C2H2
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MESMNYHEES SEGVVDEDVG VGRSYECVFC KRGFNTAQAL GGHMNIHRKH RSASARNKPK  60
LEDAPRILPS SPHLLSNSTL YESNYHHPYT SPSNPGDWRM RLALDKPKLP INQDKELNLE  120
LRLGYD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080295.17e-22transcriptional regulator SUPERMAN-like
RefseqXP_022872994.15e-22transcriptional regulator SUPERMAN-like
TrEMBLA0A4D8ZWN44e-35A0A4D8ZWN4_SALSN; Uncharacterized protein
STRINGMigut.D00404.1.p8e-19(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21362152