PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100202020041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LBD

Protein Properties

Length: 90aa MW: 10226.6 Da PI: 4.4334

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100202020041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	39.5	1.6e-12	1	40	61	100
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +vyeA ar+r+PvyG++g i +lq+q+++l+++la++++e Ote100202020041\|100202020041 1 MVYEASARMREPVYGCAGAICQLQKQVNELQEQLAKAQAE 40 69**********************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	2.0E-10	1	38	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	9.466	1	41	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
MVYEASARMR EPVYGCAGAI CQLQKQVNEL QEQLAKAQAE LVNLQCQNAN LMALICMEMS 60 SQSLLLQNHD IHQHFPDQTT SFLDEQSLWT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012838343.1	8e-33	PREDICTED: LOB domain-containing protein 1-like
Refseq	XP_016548470.1	6e-33	PREDICTED: LOB domain-containing protein 1-like
Refseq	XP_021680496.1	9e-33	LOB domain-containing protein 1-like
Swissprot	Q9LQR0	4e-20	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A2G9GMD1	1e-33	A0A2G9GMD1_9LAMI; Uncharacterized protein
STRING	Migut.N02625.1.p	3e-32	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669