PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100202020221
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ARF
Protein Properties Length: 766aa    MW: 84959 Da    PI: 6.478
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100202020221genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3758.8e-24141242199
                                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                                   f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L 
  Ote100202020221|100202020221 141 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyKEQ-RPSQELIATDLHGVEWKFRHIYRGQPRRHLLTTGWSLFVSQKNLV 220
                                   99****************************86333.45679**************************************** PP

                                   TT-EEEEEE-SSSEE..EEEEE-S CS
                            B3  76 egDfvvFkldgrsefelvvkvfrk 99 
                                   +gD v+F   + + +el+++++r+
  Ote100202020221|100202020221 221 AGDAVLFL--RGEVGELRLGIRRA 242
                                   ********..4499999****996 PP
2Auxin_resp105.37.1e-35267348182
                    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrs 81 
                                   +a+a+s++  F+v++ Pras+++F++++ek++k + +++ vG+Rf+m+f+ +ds+err+sG v+gv d+dp+rWp+SkWr+
  Ote100202020221|100202020221 267 VANALSSNGSFHVYFTPRASHADFIIPYEKYVKCTASPIPVGTRFRMRFDFDDSPERRFSGAVTGVGDIDPYRWPHSKWRC 347
                                   6899***************************************************************************** PP

                    Auxin_resp  82 L 82 
                                   L
  Ote100202020221|100202020221 348 L 348
                                   9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.76E-44132256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-40135254IPR015300DNA-binding pseudobarrel domain
CDDcd100176.98E-22139241No hitNo description
SMARTSM010193.7E-24141243IPR003340B3 DNA binding domain
PfamPF023622.0E-21141242IPR003340B3 DNA binding domain
PROSITE profilePS5086312.943141243IPR003340B3 DNA binding domain
PfamPF065075.7E-29267348IPR010525Auxin response factor
PROSITE profilePS5174523.1610694IPR000270PB1 domain
SuperFamilySSF542771.91E-11612689No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MLDEVEKNDA CFNGGECEGE SSPPSIYVEL WHACAGPLTS LPKKGNVVLY FPQGHLEQAA  60
SASPFPSIDI PTFDLPPQIF CRVIDVRLLA NKENDEVYTQ LSLLPLPELA GVKLDSKETE  120
NSGVDDDENG GKPTKSTSHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DYKEQRPSQE  180
LIATDLHGVE WKFRHIYRGQ PRRHLLTTGW SLFVSQKNLV AGDAVLFLRG EVGELRLGIR  240
RAARPRNGLP DSVIKKQSSY PNVLSPVANA LSSNGSFHVY FTPRASHADF IIPYEKYVKC  300
TASPIPVGTR FRMRFDFDDS PERRFSGAVT GVGDIDPYRW PHSKWRCLMV RWDEDIMSNH  360
QERVSPWEID FSGNYAPLSI QSSPRLKKPR SNPHAMTPLG SPIAGGGAVF DFEESVRSSK  420
VLQGQENVGL VSPFYRSDRV NRHLDFGISN RVDKISYGEL VRSHAPANFT GFLESNWFPK  480
VLQGQEICSF KSLAGRSSSN LGYSVHKTPS FYPLASEGSR SMHVPHKSIH TMLSNFSDFQ  540
SRSHLPCPSS ILSGAKADVA ISMERTSPPP TSLMHLKNSE NSLTEKVPTC KIFGFSLTED  600
PISLQGPSKR SCTKVHKQGS LVGRAIDLSR LNGYDDLLTE LERLFSMEGL LRDPNHGWRI  660
LYTDSENDMM VVGDDPWHEF VEVATKIHIY THEEVEKLTI GMNSDDTKSC LEEAPSAADV  720
SKSSSVGQPD SSPTVKTNGE MYVVPSLELL ALQLVMLPIL LVEIGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1182937622359Auxin response factor 1
4ldw_A1e-1182937622359Auxin response factor 1
4ldw_B1e-1182937622359Auxin response factor 1
4ldx_A1e-1182937622359Auxin response factor 1
4ldx_B1e-1182937622359Auxin response factor 1
4ldy_A1e-1182937622359Auxin response factor 1
4ldy_B1e-1182937622359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089884.10.0auxin response factor 4 isoform X2
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A191T8T20.0A0A191T8T2_SALMI; Auxin response factor
STRINGMigut.N02611.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51432234
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]