PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100202150021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 88aa    MW: 9660.05 Da    PI: 4.1948
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100202150021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS568.2e-182586158219
                          GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvs 219
                                   l e+g+rLa++Ae+++v+fe++ +va++l+dl+ +++++k+gE++aVn++++lh+ll+++++
  Ote100202150021|100202150021  25 LAEVGWRLAQLAESINVEFEYRGFVASSLADLDASMFDIKEGETVAVNSIFELHQLLARPAA 86 
                                   689******************************************************88775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098511.871188IPR005202Transcription factor GRAS
PfamPF035142.8E-152586IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MACAEAVQQE NFKLAEALVK KIGFLAEVGW RLAQLAESIN VEFEYRGFVA SSLADLDASM  60
FDIKEGETVA VNSIFELHQL LARPAAID
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070609.12e-31DELLA protein GAI1
SwissprotQ8S4W71e-27GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A4D8YN344e-31A0A4D8YN34_SALSN; DELLA protein
TrEMBLA0A4D8Z1J75e-32A0A4D8Z1J7_SALSN; DELLA protein
TrEMBLB9VRA75e-31B9VRA7_9LAMI; Putative gibberellin signaling DELLA protein
STRINGMigut.E00445.1.p1e-29(Erythranthe guttata)