PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100202550031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LBD

Protein Properties

Length: 181aa MW: 19847.7 Da PI: 5.1907

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100202550031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.8	3.6e-38	33	135	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanv...hklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++ ++FGasn++k+l++lpe +r da+ss+vyeA+ar+r+PvyG++g Ote100202550031\|100202550031 33 PCAACKILRRRCVEKCVLAPYFPPHDPLKFTIAxxxXRVFGASNIIKFLQELPEGQRADAVSSMVYEANARLREPVYGCAG 113 7************************99988633369*************************************** PP DUF260 79 vilklqqqleqlkaelallkee 100 +i++lq+++++l+++la++++e Ote100202550031\|100202550031 114 LIFQLQKHVNELQEQLAKAQAE 135 ****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.009	32	136	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-38	33	133	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MEGSDTTTVT TAASPSPSSL SSPPTPQCVV ISPCAACKIL RRRCVEKCVL APYFPPHDPL 60 KFTIAXXXXR VFGASNIIKF LQELPEGQRA DAVSSMVYEA NARLREPVYG CAGLIFQLQK 120 HVNELQEQLA KAQAELVNVH CQNANLMAII SQTLLLHNDD DTSSFWDEGS MGFSCEQALW 180 T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-37	32	141	10	116	LOB family transfactor Ramosa2.1
5ly0_B	1e-37	32	141	10	116	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090094.1	3e-74	LOB domain-containing protein 1
Swissprot	Q9LQR0	5e-62	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A4D8YX18	9e-74	A0A4D8YX18_SALSN; Uncharacterized protein
STRING	POPTR_0008s04350.1	1e-69	(Populus trichocarpa)
STRING	XP_009610820.1	8e-70	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669