PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100202600021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 258aa MW: 28933.3 Da PI: 6.1619

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100202600021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.7	5.7e-10	143	190	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k + Ka +L + ++Y++sLq Ote100202600021\|100202600021 143 SHSLAERARREKISERMKILQDLVPGC----NKVVGKALVLDEIINYVQSLQ 190 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.21E-9	137	194	No hit	No description
SuperFamily	SSF47459	3.4E-17	137	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.605	139	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-17	139	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-7	143	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-10	145	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MDHQGAEMMN GAGGGDVYNF GQIWPRFQMN VNARSYGLGM DPMPTDQRSN DNSRKRRDED 60 ERCAKGGGGA SXXXXXXXXX XXXXXXVSSE GKNEDDSKRL KAVGENKGEV DSGKVVERRT 120 NPDEQPKQDY IHVRARRGQA TDSHSLAERA RREKISERMK ILQDLVPGCN KVVGKALVLD 180 EIINYVQSLQ RQVEFLSMKL ETVNARGEID EYPSKDFAQQ SFEAPPMASF GSQSTREYRG 240 SSPEWLHMQI GSGFDQAS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269\|PubMed:23715469}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071046.1	1e-121	transcription factor bHLH79-like
Swissprot	Q69WS3	5e-66	BH094_ORYSJ; Transcription factor BHLH094
TrEMBL	A0A0H3YBV3	1e-123	A0A0H3YBV3_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.L01368.1.p	1e-108	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1287	24	71