PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100202860051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 251aa    MW: 27558.7 Da    PI: 10.5831
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100202860051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.46e-123989146
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                                  +++WT+eE+e l  +v ++G g Wk I           +R+  ++k++w++
  Ote100202860051|100202860051 39 KLKWTAEEEEALTAGVMKYGAGKWKNILVDSEfkhklANRSNVDLKDKWRN 89
                                  689**********************************9************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.0163495IPR017930Myb domain
SuperFamilySSF466891.22E-143790IPR009057Homeodomain-like
SMARTSM007174.6E-63893IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-133890IPR009057Homeodomain-like
PfamPF002492.9E-83989IPR001005SANT/Myb domain
CDDcd116601.62E-184190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
LRSTEREPQI LGDFGGATVC TVRRSRICAI RGSEMGNQKL KWTAEEEEAL TAGVMKYGAG  60
KWKNILVDSE FKHKLANRSN VDLKDKWRNM GGHGSGAIIP VAPRANTNPV SAQTPKSQSS  120
SLVLVPAGSI DVKAPKTPEV QRRYKIKLAS LGTKTPLPKQ KVVKSKLRRE SRPSIKTEIE  180
DAAKTAAHKI AEAEHKSLLA AEAVKESERL SQMAEDADAV VMQLKQILEQ WKDKPGNEKS  240
KSFRADAKLV V
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012827958.15e-62PREDICTED: telomere repeat-binding factor 4-like
TrEMBLA0A4D9BEK27e-72A0A4D9BEK2_SALSN; Myb proto-oncogene protein, plant
STRINGMigut.D00953.1.p2e-61(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355