PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100203620031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

E2F/DP

Protein Properties

Length: 306aa MW: 33458.5 Da PI: 6.6976

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100203620031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	87.6	9.1e-28	57	137	3	71
E2F_TDP 3 eksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkeknei 67 +++Lr++++k ++ek+e+ gi+t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei Ote100203620031\|100203620031 57 GRGLRQFSMK---VCEKVESkGITTYNEVADELVAEfadpnnnlgspdqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEI 133 689*****...*999**************************************************.* PP E2F_TDP 68 rwkg 71 +wkg Ote100203620031\|100203620031 134 QWKG 137 98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF009404	1.3E-118	1	306	IPR015648	Transcription factor DP
Gene3D	G3DSA:1.10.10.10	9.0E-46	52	143	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM01372	8.1E-36	55	137	IPR003316	E2F/DP family, winged-helix DNA-binding domain
Pfam	PF02319	3.6E-25	58	137	IPR003316	E2F/DP family, winged-helix DNA-binding domain
SuperFamily	SSF46785	1.24E-21	58	138	IPR011991	Winged helix-turn-helix DNA-binding domain
CDD	cd14458	7.71E-43	142	245	IPR014889	Transcription factor DP, C-terminal
SMART	SM01138	2.8E-69	144	304	IPR014889	Transcription factor DP, C-terminal
SuperFamily	SSF144074	1.46E-40	144	249	No hit	No description
Pfam	PF08781	2.3E-39	145	256	IPR014889	Transcription factor DP, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007049	Biological Process	cell cycle
GO:0005667	Cellular Component	transcription factor complex
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MSTSGSVGSP SSRSEAAAAT PASDSKSSRL NNLDAQGDDG NRKKKRGQRA VAGDKGGRGL 60 RQFSMKVCEK VESKGITTYN EVADELVAEF ADPNNNLGSP DQQYDEKNIR RRVYDALNVL 120 MAMDIISKDK KEIQWKGLPQ TSLSDIEELK TERAGIRSRI EKKAAYLEEL QEQYVGLENL 180 IQRNEKLFAS GNAPSGGVAL PFILVQTRPH ATVEVEISED MQLVHFDFNS APFELHDDNY 240 VLKAMKISEK TRVDGAAQNS MTDGGESSSM NNVPRLPPAS RPNISGMSPA SSPVPGILKA 300 RVKHEH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1cf7_B	1e-42	49	142	1	93	PROTEIN (TRANSCRIPTION FACTOR DP-2)
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269\|PubMed:11891240, ECO:0000269\|PubMed:16920782}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011075421.1	0.0	transcription factor-like protein DPB isoform X1
Swissprot	Q9FNY2	1e-139	DPB_ARATH; Transcription factor-like protein DPB
TrEMBL	A0A2G9FZK6	0.0	A0A2G9FZK6_9LAMI; E2F-like protein
STRING	Migut.J01656.1.p	1e-170	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6265	24	35