PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100203900091

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

G2-like

Protein Properties

Length: 375aa MW: 41397.1 Da PI: 5.0794

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100203900091	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.4	5.8e-32	171	225	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fv+ v++LGG e+AtPk +l lm+v+gLt++hvkSHLQkYR+ Ote100203900091\|100203900091 171 KARMRWTPELHEAFVDSVNKLGGCERATPKGVLLLMNVEGLTIYHVKSHLQKYRT 225 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	34	No hit	No description
PROSITE profile	PS51294	9.766	168	228	IPR017930	Myb domain
SuperFamily	SSF46689	6.99E-16	169	225	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.5E-30	169	226	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.2E-23	171	225	IPR006447	Myb domain, plants
Pfam	PF00249	3.2E-8	173	224	IPR001005	SANT/Myb domain
Pfam	PF14379	2.2E-21	256	302	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MAPPSVKTSS ETDLSEMEAS GTTVGHLFSS VSGCPTRIHC SPLSPNTTHT LSPKAGASSV 60 ENRHPFSVMQ TTESNGYNME NNDVSWNEIE YFLDTPLKNS DQNGQLEWAD QLISVDDGTL 120 DANWSDLLVD GSLPDSELKL PDLPPNTSSH QPQFPQLPPH PLPNVNASSS KARMRWTPEL 180 HEAFVDSVNK LGGCERATPK GVLLLMNVEG LTIYHVKSHL QKYRTARFKP ESPEGTPGKK 240 PKTTSDMPSL DLKTTMEITE ALRIQMEVQK QLHEQLEIQR TLQIRIEEQG KRLQEMFEQQ 300 RKLEEEKGKA SSSNADRPQT PTTEKQPCIG NDKSQSSQIN SASTKESAAD VCISADEPKR 360 TKVDETAALG SPHES

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MAPPSVKTSS ETDLSEMEAS GTTVGHLFSS VSGCPTRIHC SPLSPNTTHT LSPKAGASSV  60
ENRHPFSVMQ TTESNGYNME NNDVSWNEIE YFLDTPLKNS DQNGQLEWAD QLISVDDGTL  120
DANWSDLLVD GSLPDSELKL PDLPPNTSSH QPQFPQLPPH PLPNVNASSS KARMRWTPEL  180
HEAFVDSVNK LGGCERATPK GVLLLMNVEG LTIYHVKSHL QKYRTARFKP ESPEGTPGKK  240
PKTTSDMPSL DLKTTMEITE ALRIQMEVQK QLHEQLEIQR TLQIRIEEQG KRLQEMFEQQ  300
RKLEEEKGKA SSSNADRPQT PTTEKQPCIG NDKSQSSQIN SASTKESAAD VCISADEPKR  360
TKVDETAALG SPHES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-29	171	229	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-29	171	229	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-29	171	229	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-29	171	229	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-29	171	229	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-29	171	229	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-29	171	229	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-29	171	229	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269\|PubMed:20838596, ECO:0000269\|PubMed:23788639}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011102186.1	1e-115	protein PHOSPHATE STARVATION RESPONSE 1 isoform X2
Swissprot	Q8GUN5	3e-71	PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBL	A0A4D9A0Y4	1e-151	A0A4D9A0Y4_SALSN; Uncharacterized protein
STRING	Migut.F02036.1.p	1e-108	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4582	21	39

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Bonnot C, et al. A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana. New Phytol., 2016. 209(1): p. 161-76 [PMID:26243630] Aleksza D,Horváth GV,Sándor G,Szabados L Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation. Plant Physiol., 2017. 175(1): p. 555-567 [PMID:28765275]