PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100203900141

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LBD

Protein Properties

Length: 196aa MW: 21414.6 Da PI: 5.6975

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100203900141	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.5	2.4e-43	40	139	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++kll++lpe++r+da++s+vyeA+ar+rdPvyG++g i Ote100203900141\|100203900141 40 PCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKLLQELPEDQRPDAVNSMVYEANARLRDPVYGCAGAIC 120 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 +lq+q+++l+aela++++e Ote100203900141\|100203900141 121 HLQKQINELQAELAKAQAE 139 *************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.653	39	140	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.7E-43	40	137	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MGYNGNTTAG AAAAAAEALS PTTPLSPPAS PPSPRVILSP CAACKILRRR CVEKCVLAPY 60 FPPTEPLKFT IAHRVFGASN IIKLLQELPE DQRPDAVNSM VYEANARLRD PVYGCAGAIC 120 HLQKQINELQ AELAKAQAEI LNIQCQNTNL IELICKQMTA KNNEDNLQQQ SMSFHENSGF 180 LLDENILGVA WDPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-44	39	160	10	131	LOB family transfactor Ramosa2.1
5ly0_B	7e-44	39	160	10	131	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012834486.1	2e-87	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	6e-77	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A4D9AES9	5e-99	A0A4D9AES9_SALSN; Uncharacterized protein
STRING	Migut.F02029.1.p	7e-89	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669